SUPPA: Fast quantification of splicing and differential splicing
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two conditions
Interactive R package to quantify, analyse and visualise alternative splicing
SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.
Integrative Pipeline for Splicing Analyses (IPSA) in Nextflow
A Nextflow pipeline for end-to-end long-read proteogenomics analysis
Docker to run rMATS for splicing quantification and analysis
Docker to run Whippet for splicing quantification and analysis
Docker to run VAST-TOOLS for splicing quantification and analysis
Docker to run MISO for splicing quantification and analysis
Docker to run SUPPA for splicing quantification and analysis
Analysis pipeline for decoding hepatitis B virus and host splicing patterns using AI models
Single-cell alternative-splicing analysis
Calculate five major splicing events using rMATS followed by annotation
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